The detailed information of tRNA gene sequence


Sequence ID>SRA1000688
Genome IDSRR001046.80610
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 109
End posion on genome 34
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ttgatagaga
tRNA gene sequence 
GGCCCCATCGTTTAGCGGCCTAGGACGCCGCCCTTTCACGGCGGTAGCACGGGTTCGAAT
CCCGTTGGGGTCACGA
Downstream region at tRNA end position 
aagcgttggg
Secondary structure (Cloverleaf model)
>SRA1000688	Glu	TTC
                   a      ACGA aagcgttggg
                     G - C
                     G + T
                     C - G
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     T G C C C     A
      C G A        C      | | | | |     G
    G       T T T G       A C G G G     C
    G       + + | |                 T T
    C       G G A C
      C T A        G     TAGC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    T T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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