The detailed information of tRNA gene sequence


Sequence ID>SRA1000736
Genome IDSRR001046.234720
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 89
End posion on genome 14
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cgggcaattt
tRNA gene sequence 
GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGATTTGCATTCAGGAGGTCAGGAGTTCGATC
CTCCTAGGCTCCACCA
Downstream region at tRNA end position 
tgacacgatt
Secondary structure (Cloverleaf model)
>SRA1000736	Ala	TGC
                   t      ACCA tgacacgatt
                     G - C
                     G - C
                     G + T
                     G - C
                     C - G
                     C - G
                     T - A          C T
                    T     T C C T C     A
      C G A        A      | | | | |     G
    T       C T C G       A G G A G     C
    G       | | | |                 T T
    G       G A G C
      G A          G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    A - T
                  T       T
                  T       A
                    T G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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