The detailed information of tRNA gene sequence


Sequence ID>SRA1000741
Genome IDSRR001046.244249
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 43
End posion on genome 131
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ggcgctgacC
tRNA gene sequence 
GGAGGGTTGGCTGAGCGGTCGAAAGCGGCGGTCTTGAAAACCGTTGTGGGGTCACACCCA
CCGGGGGTTCGAATCCCTCACCCTCCGNnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000741	Ser	TGA
                   C      GNnn nnnnnnnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     T - A          T A
                    T     C T C C C     A
      C G A        G      | + | | |     G
    G       G T C G       G G G G G     C
    G         | | |                 T T
    T       A A G C
      C G A        G     TGTGGGGTCACACCCACC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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