The detailed information of tRNA gene sequence


Sequence ID>SRA1000744
Genome IDSRR001046.246448
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Species
Start position on genome 100
End posion on genome 25
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
nnnnncgcaa
tRNA gene sequence 
AGGGCGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGT
CCTGTCCGCCCTGCGA
Downstream region at tRNA end position 
cgaactgtca
Secondary structure (Cloverleaf model)
>SRA1000744	Trp	CCA
                   a      GCGA cgaactgtca
                     A - T
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T G
                    T     T G T C C     A
      T A A        G      + | | | |     G
    T       C T C G       G C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     AGGTT
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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