The detailed information of tRNA gene sequence


Sequence ID>SRA1000805
Genome IDSRR001047.109089
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 42
End posion on genome 115
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
tcggagccaa
tRNA gene sequence 
GCCCTTGTAGCTCAGTTGGCTAGAGCATCCGCCTTGTAAGCGGGAGGTCGTCCGTTCGAG
TCGGACCGAGGGCTnnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1000805	Thr	TGT
                   a      Tnnn nnnnnnnnnn
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A
                     T + G
                     G - C          T G
                    T     C A G G C     A
      T G A        A      | | | | |     G
    T       C T C G       G T C C G     C
    G       | | | |                 T T
    G       G A G C
      C T A        A     AGGTC
                    T + G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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