The detailed information of tRNA gene sequence


Sequence ID>SRA1000818
Genome IDSRR001047.159224
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 28
End posion on genome 103
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position
cgtgttagtT
tRNA gene sequence
AGGGCTGTAGCTCAATTGGTTAGAGCGCTTGATTGTCGATCAAGAGGTTGCGGGTTCGAG
TCCCGTCAGTCCTGTtt
Downstream region at tRNA end position
ttagggggta
Secondary structure (Cloverleaf model)
>SRA1000818	Asp	GTC
                   T      GTtt ttagggggta
                     A - T
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C          T G
                    T     T G C C C     A
      T A A        A      + | | | |     G
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTT
                    C - G
                    T - A
                    T - A
                    G - C
                    A - T
                  T       A
                  T       G
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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