The detailed information of tRNA gene sequence


Sequence ID>SRA1000822
Genome IDSRR001047.175567
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 6
End posion on genome 91
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position
nnnnncgtaa
tRNA gene sequence
GCCTCGGTGGTGAAATTGGTATACACGAGGGACTCAAAAATCCCTTGCCGTAAGGCGTGT
CGGTTCGACCCCGACCCGAGGCACCA
Downstream region at tRNA end position
tcttttcttt
Secondary structure (Cloverleaf model)
>SRA1000822	Leu	CAA
                   a      ACCA tcttttcttt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          C C
                    T     C A G C C     A
      T A A        G      | | | | |     G
    T       A G T G       G T C G G     C
    G         | | |                 T T
    G       A C A C
      T A T        G     TTGCCGTAAGGCGT
                    A   C
                    G - C
                    G - C
                    G + T
                    A   A
                  C       A
                  T       A
                    C A A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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