The detailed information of tRNA gene sequence


Sequence ID>SRA1000852
Genome IDSRR001047.283999
Search identical group
Phylum/ClassTilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Species
Start position on genome 101
End posion on genome 12
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
accaaaataa
tRNA gene sequence 
GGAAGTGTGCTAGAGTGGTTTAATAGAACAGTCTTGAAAACTGTCAGACCTTCGCGGGTC
TCGTGGGTTCAAATCCCACCGCTTCCTCCA
Downstream region at tRNA end position 
ttgcgcgaaa
Secondary structure (Cloverleaf model)
>SRA1000852	Ser	TGA
                   a      TCCA ttgcgcgaaa
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T + G
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     A
    G       G A T C       G T G G G     C
    G         | | |                 T T
    T       A T A G
      T T A        A     CAGACCTTCGCGGGTCTC
                    A - T
                    C - G
                    A - T
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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