The detailed information of tRNA gene sequence


Sequence ID>SRA1000949
Genome IDSRR001049.273405
Search identical group
Phylum/ClassLine Islands Corals, viral fraction from water of Palmyra (SRP000141)
Species
Start position on genome 89
End posion on genome 13
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tatatattaa
tRNA gene sequence 
GGACCTCTAGCTCAGTTGGTTAGAGCACACCGCTCATAACGGTTAGGTCCTCGGTTCGAG
TCCGAGGGGGTCCACCA
Downstream region at tRNA end position 
aatatggaga
Secondary structure (Cloverleaf model)
>SRA1000949	Met	CAT
                   a      ACCA aatatggaga
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     T + G
                     C - G          T G
                    T     G A G C C     A
      T G A        A      | | | | |     G
    T       C T C G       C T C G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        A     AGGTC
                    C   T
                    A - T
                    C - G
                    C - G
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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