The detailed information of tRNA gene sequence


Sequence ID>SRA1001227
Genome IDSRR001056.6696
Search identical group
Phylum/ClassSolar Salterns, viral fraction from medium salinity saltern in San Diego, CA (SRP000146)
Species
Start position on genome 29
End posion on genome 104
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ctttaatttc
tRNA gene sequence 
GGGGAATTAGCTCAATCGGCAGAGCAATGTCTTGATAAGGCATATGTTATTGGTTCAAGT
CCAATATTCCCTACCA
Downstream region at tRNA end position 
tgcgnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001227	Ile	GAT
                   c      ACCA tgcgnnnnnn
                     G + T
                     G - C
                     G - C
                     G - C
                     A - T
                     A - T
                     T - A          T G
                    T     T A A C C     A
      T A A        A      | | | | |     A
    C       C T C G       A T T G G     C
    G       | | | |                 T T
    G       G A G C
      C A          A     ATGTT
                    A - T
                    T - A
                    G - C
                    T + G
                    C - G
                  T       A
                  T       A
                    G A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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