The detailed information of tRNA gene sequence


Sequence ID>SRA1001245
Genome IDSRR001058.7651
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
Species
Start position on genome 116
End posion on genome 29
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position
caaaaaagcc
tRNA gene sequence
GGAGGGGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTAAGTCGAAAGGCTTC
GAGGGTTCGAATCCCTCCCCCTCCGCCA
Downstream region at tRNA end position
gaatccttac
Secondary structure (Cloverleaf model)
>SRA1001245	Ser	GGA
                   c      GCCA gaatccttac
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G A G G G     C
    G         | | |                 T T
    T       A G G A
      C G A        G     TAAGTCGAAAGGCTTC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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