The detailed information of tRNA gene sequence


Sequence ID>SRA1001246
Genome IDSRR001058.9704
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
Species
Start position on genome 115
End posion on genome 28
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
caaaaaagcc
tRNA gene sequence 
GGAGGGGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTAAGTCGAAAGGCTTC
GAGGGTTCGAATCCCTCCCCCTCCGCCA
Downstream region at tRNA end position 
gaatccttac
Secondary structure (Cloverleaf model)
>SRA1001246	Ser	GGA
                   c      GCCA gaatccttac
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C T       G A G G G     C
    G         | | |                 T T
    T       A G G A
      C G A        G     TAAGTCGAAAGGCTTC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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