The detailed information of tRNA gene sequence


Sequence ID>SRA1001250
Genome IDSRR001059.4358
Search identical group
Phylum/ClassSolar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
Species
Start position on genome 29
End posion on genome 102
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
cttttgcatt
tRNA gene sequence 
GGCTAGGTGGCAGAGTGGTGATGCAGCGGCCTGCAAAGCCGTGTACGCCGGTTCGATTCC
GGCCCTAGCCTCCA
Downstream region at tRNA end position 
caccgannnn
Secondary structure (Cloverleaf model)
>SRA1001250	Cys	GCA
                   t      TCCA caccgannnn
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     G - C
                     G - C          T T
                    T     C G G C C     A
        G A        G      | | | | |     G
      T     G A C G       G C C G G     C
      G       | | |                 T T
      G     A T G C
        T G        A     GTAC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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