The detailed information of tRNA gene sequence


Sequence ID>SRA1001453
Genome IDSRR001064.382268
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
Species
Start position on genome 111
End posion on genome 22
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
accggcgttt
tRNA gene sequence 
GGAGAGATGGCAGAGTGGTCGAACGCGGCGGTCTTGAAAACCGTTGACCGTGTGAGCGGT
CCGGGGGTTCGAATCCCTCTCTCTCCGCAA
Downstream region at tRNA end position 
aaactaaagg
Secondary structure (Cloverleaf model)
>SRA1001453	Ser	TGA
                   t      GCAA aaactaaagg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
      T G A        G      | + | | |     G
    G       G A C G       G G G G G     C
    G           | |                 T T
    T       A C G C
      C G A        G     TGACCGTGTGAGCGGTCC
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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