The detailed information of tRNA gene sequence


Sequence ID>SRA1001478
Genome IDSRR001066.14364
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000154)
Species
Start position on genome 102
End posion on genome 26
Amino Acid Arg
Anticodon ACG
Upstream region at tRNA start position 
nnnnnnnncg
tRNA gene sequence 
TCGGCTGTAGCTCAGCTGGATAGAGTACTTGGCTACGAACCAAGGGGTCGTGGGTTCGAT
TCCTGCCAGCCGCACCA
Downstream region at tRNA end position 
gatttaaagg
Secondary structure (Cloverleaf model)
>SRA1001478	Arg	ACG
                   g      ACCA gatttaaagg
                     T   C
                     C - G
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T T
                    T     C G T C C     A
      C G A        A      | + + | |     G
    T       C T C G       G T G G G     C
    G       | | | +                 T T
    G       G A G T
      A T A        A     GGGTC
                    C - G
                    T - A
                    T - A
                    G - C
                    G - C
                  C       A
                  T       A
                    A C G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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