The detailed information of tRNA gene sequence


Sequence ID>SRA1001501
Genome IDSRR001067.30345
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000155)
Species
Start position on genome 105
End posion on genome 15
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cccgaatcca
tRNA gene sequence 
GGAGAGGTGGATGAGTGGTTGAAGTCGCACGCCTGGAAAGCGTGTATAGGTTAATAGCCT
ATCGGGGGTTCGAATCCCCCTCTCTCCGCCA
Downstream region at tRNA end position 
aaatgaaaaa
Secondary structure (Cloverleaf model)
>SRA1001501	Ser	GGA
                   a      GCCA aaatgaaaaa
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     C C C C C     A
      T G A        G      | | | | |     G
    G       G T A G       G G G G G     C
    G         + | |                 T T
    T       A G T C
      T G A        G     TATAGGTTAATAGCCTATC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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