The detailed information of tRNA gene sequence


Sequence ID>SRA1001528
Genome IDSRR001068.46441
Search identical group
Phylum/ClassTilapia Farm, microbial fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000156)
Species
Start position on genome 98
End posion on genome 12
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
nnnnnnctgt
tRNA gene sequence 
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGTCCTTACGGACGTG
AGGGTTCAAGTCCATCTCTTCGCACCA
Downstream region at tRNA end position 
attgatgatc
Secondary structure (Cloverleaf model)
>SRA1001528	Leu	CAG
                   t      ACCA attgatgatc
                     G - C
                     C - G
                     G - C
                     A - T
                     A - T
                     G - C
                     G + T          T G
                    T     C T A C C     A
      T A A        G      | |   | |     A
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        G     TGTCCTTACGGACGT
                    C - G
                    T - A
                    A - T
                    G + T
                    C - G
                  T       T
                  T       G
                    C A G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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