The detailed information of tRNA gene sequence


Sequence ID>SRA1001539
Genome IDSRR001069.19748
Search identical group
Phylum/ClassTilapia Farm, viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish showed no sign of disease) (SRP000157)
Species
Start position on genome 35
End posion on genome 111
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
ctttttttat
tRNA gene sequence 
TGGGAAATAGCTTAATTTGGTAGAGCACTTAGTTTGGGTCTAAGGGGTTGCAGGTTCAAG
TCCTGTTTTTTCCAACC
Downstream region at tRNA end position 
caaatatgan
Secondary structure (Cloverleaf model)
>SRA1001539	Pro	TGG
                   t      AACC caaatatgan
                     T   C
                     G - C
                     G + T
                     G + T
                     A - T
                     A - T
                     A - T          T G
                    T     T G T C C     A
      T A A        A      + | | | |     A
    T       T T C G       G C A G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        A     GGGTT
                    C - G
                    T - A
                    T - A
                    A - T
                    G - C
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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