The detailed information of tRNA gene sequence


Sequence ID>SRA1001543
Genome IDSRR001069.33458
Search identical group
Phylum/ClassTilapia Farm, viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish showed no sign of disease) (SRP000157)
Species
Start position on genome 39
End posion on genome 115
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tttttttatt
tRNA gene sequence 
TGGGAAATAGCTTAATTTGGTAGAGCACTTAGTTTGGGTCTAAGGGGTTGCAGGTTCAAG
TCCTGTTTTTCCAACCA
Downstream region at tRNA end position 
aatatgagat
Secondary structure (Cloverleaf model)
>SRA1001543	Pro	TGG
                   t      ACCA aatatgagat
                     T - A
                     G - C
                     G - C
                     G + T
                     A - T
                     A - T
                     A - T          T G
                    T     T G T C C     A
      T A A        A      + | | | |     A
    T       T T C G       G C A G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        A     GGGTT
                    C - G
                    T - A
                    T - A
                    A - T
                    G - C
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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