The detailed information of tRNA gene sequence


Sequence ID>SRA1001555
Genome IDSRR001070.54231
Search identical group
Phylum/ClassTilapia Farm, viral community isolated from the gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA, fish were sick at time of sampling) (SRP000158)
Species
Start position on genome 81
End posion on genome 3
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position
ttttttttat
tRNA gene sequence
TGGGAAATAGCTTAATTTGGTAGAGCACTTAGTTTGGGTCTAAAGGGGTTTGCAGGTTCA
AGTCCTGTTTTTCCAACCA
Downstream region at tRNA end position
aannnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001555	Pro	TGG
                   t      ACCA aannnnnnnn
                     T - A
                     G - C
                     G - C
                     G + T
                     A - T
                     A - T
                     A - T          T G
                    T     T G T C C     A
      T A A        A      + | | | |     A
    T       T T C G       G C A G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        A     GGGGTTT
                    C   A
                    T - A
                    T - A
                    A - T
                    G - C
                  T       T
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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