The detailed information of tRNA gene sequence


Sequence ID>SRA1001558
Genome IDSRR001071.25033
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000159)
Species
Start position on genome 17
End posion on genome 88
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position
cctgagcccg
tRNA gene sequence
TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTC
CCCGACGGGGAGttt
Downstream region at tRNA end position
ccttttagat
Secondary structure (Cloverleaf model)
>SRA1001558	Asp	GTC
                   g      Gttt ccttttagat
                     T - A
                     C - G
                     C - G
                     T + G
                     C - G
                     G - C
                     T - A          T T
                    T     G C C C C     A
      T G A        A      | | | | |     G
    G       T A T G       C G G G G     C
    G       + | | +                 T T
    A       G T A T
      C A          C     AGAC
                    T - A
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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