The detailed information of tRNA gene sequence


Sequence ID>SRA1001561
Genome IDSRR001071.30685
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000159)
Species
Start position on genome 15
End posion on genome 105
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cccgaatcca
tRNA gene sequence 
GGAGAGGTGGNTGAGTGGTTGAAGTCGCACGCCTGGAAAGCGTGTATAGGTTAATAGCCT
ATCGGGGGTTCGAATCCCCCTCTCTCCGCCA
Downstream region at tRNA end position 
aaatgaaaac
Secondary structure (Cloverleaf model)
>SRA1001561	Ser	GGA
                   a      GCCA aaatgaaaac
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     C C C C C     A
      T G A        G      | | | | |     G
    G       G T N G       G G G G G     C
    G         +   |                 T T
    T       A G T C
      T G A        G     TATAGGTTAATAGCCTATC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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