The detailed information of tRNA gene sequence


Sequence ID>SRA1001571
Genome IDSRR001072.11004
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 32
End posion on genome 105
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
tcacgccgaa
tRNA gene sequence 
CTGCCCTTAGCTCAACTGGATAGAGCAATGGCCTTCTAAGCCATAGGTCGGGGGTTCGAG
TCCCTCAGGGCAGGnnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1001571	Arg	TCT
                   a      Gnnn nnnnnnnnnn
                     C - G
                     T - A
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A          T G
                    T     C T C C C     A
      C A A        A      | + | | |     G
    T       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      A T A        A     AGGTC
                    A - T
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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