The detailed information of tRNA gene sequence


Sequence ID>SRA1001583
Genome IDSRR001072.47135
Search identical group
Phylum/ClassTilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA; fish were sick at time of sampling (SRP000160)
Species
Start position on genome 15
End posion on genome 89
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
cgcaagtttt
tRNA gene sequence 
GCCCATGTGGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGTCGGCAGTTCGATCC
TGCCCATGGGCACCA
Downstream region at tRNA end position 
cgcatccacc
Secondary structure (Cloverleaf model)
>SRA1001583	Thr	GGT
                   t      ACCA cgcatccacc
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T
                     T - A
                     G - C          C T
                    T     C C G T C     A
        G A        G      | | | | |     G
      T     C T C G       G G C A G     C
      G     | | | |                 T T
      G     G A G C
        T A        A     AGGTC
                    C - G
                    T - A
                    C - G
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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