The detailed information of tRNA gene sequence


Sequence ID>SRA1001673
Genome IDSRR001079.42637
Search identical group
Phylum/ClassCoral Stressors,viral fraction from whole Porites compressa tissue extracts; a temperature stressor experiment (SRP000167)
Species
Start position on genome 14
End posion on genome 90
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
gaccacaaac
tRNA gene sequence
GGGCTTGTAGCTCAGTCGGTTAGAGCGAACCGCTCATAACGGTTTGGTCGCTGGTTCGAG
TCCAGCCGAGCCCACCA
Downstream region at tRNA end position
tttggagcag
Secondary structure (Cloverleaf model)
>SRA1001673	Met	CAT
                   c      ACCA tttggagcag
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     T + G
                     G - C          T G
                    T     C G A C C     A
      T G A        A      | | | | |     G
    C       C T C G       G C T G G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     TGGTC
                    A - T
                    A - T
                    C - G
                    C - G
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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