The detailed information of tRNA gene sequence


Sequence ID>SRA1001809
Genome IDSRR001308.66705
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 41
End posion on genome 136
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
gttcggcact
tRNA gene sequence 
GGAAGGGAACCGTTTCCCGGTGGAGCGCCCGGACTTCAAATCCGGTGTGAGGCGCTGAGC
GTCTTTGGTGGGTTCGACTCCCACTCCCTTCCGCCA
Downstream region at tRNA end position 
gttttcgaga
Secondary structure (Cloverleaf model)
>SRA1001809	SeC	TCA
                   t      GCCA gttttcgaga
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T          T C
                    A     C A C C C     A
      C C T        C      | | | | |     G
    C       T T G C       G T G G G     C
    G       | + | |                 T T
    G       A G C G
      T G G        C     TGTGAGGCGCTGAGCGTCTTTG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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