The detailed information of tRNA gene sequence


Sequence ID>SRA1001813
Genome IDSRR001308.68098
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 102
End posion on genome 12
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position
cgagggcttc
tRNA gene sequence
GGAGCGGTGGATGAGCGGTTTAAGTCGCACGCCTGGAAAGCGTGTGAGGGTTAATAGCCC
TCCGCGGGTTCGAATCCCGCCTGCTCCGCCA
Downstream region at tRNA end position
gaaattggtt
Secondary structure (Cloverleaf model)
>SRA1001813	Ser	GGA
                   c      GCCA gaaattggtt
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G + T
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G T A G       G C G G G     C
    G         + | |                 T T
    T       A G T C
      T T A        G     TGAGGGTTAATAGCCCTCC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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