The detailed information of tRNA gene sequence


Sequence ID>SRA1002105
Genome IDSRR001308.243790
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 227
End posion on genome 135
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gagcttcgcc
tRNA gene sequence 
GGAGTCGTGACCGAGTGGCCGAAGGTGCTCCCCTGCTAAGGGAGTATGTGGGCAAAACCT
GCATCGAGGGTTCGAATCCCTCCGACTCCGCCA
Downstream region at tRNA end position 
gcgatacacc
Secondary structure (Cloverleaf model)
>SRA1002105	Ser	GCT
                   c      GCCA gcgatacacc
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       G C C A       G A G G G     C
    G         | | |                 T T
    C       A G G T
      C G A        G     TATGTGGGCAAAACCTGCATC
                    C - G
                    T - A
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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