The detailed information of tRNA gene sequence


Sequence ID>SRA1002143
Genome IDSRR001308.271305
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 46
End posion on genome 132
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tatttttata
tRNA gene sequence 
ACTGAGGTGGCTGAGCGGTCGATAGCGCTGATTTGCTAAATCAGTATATCTGCAAAGGTA
TCATGGGTTCAAATCCCATCCTCAGGGtat
Downstream region at tRNA end position 
ttatctattt
Secondary structure (Cloverleaf model)
>SRA1002143	Ser	GCT
                   a      Gtat ttatctattt
                     A   G
                     C - G
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T A C C C     A
      C G A        G      | | | | |     A
    G       G T C G       A T G G G     C
    G       + | | |                 T T
    T       T A G C
      C G A        G     TATATCTGCAAAGGTATC
                    C - G
                    T - A
                    G - C
                    A - T
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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