The detailed information of tRNA gene sequence


Sequence ID>SRA1002176
Genome IDSRR001308.289111
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 34
End posion on genome 125
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tcgggcctgt
tRNA gene sequence 
GGAGACGTGGCCGAGCGGCTGAAGGCACTCGTTTGCTAAATGAGCATACCTTGAAAAGGG
TATCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Downstream region at tRNA end position 
ccaccagatg
Secondary structure (Cloverleaf model)
>SRA1002176	Ser	GCT
                   t      GCCA ccaccagatg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C G A        G      | | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    C       A G G C
      T G A        A     CATACCTTGAAAAGGGTATC
                    C - G
                    T - A
                    C - G
                    G + T
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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