The detailed information of tRNA gene sequence


Sequence ID>SRA1002235
Genome IDSRR001308.321961
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 104
End posion on genome 179
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tctaggaaat
tRNA gene sequence 
AGGTCAATAGCTCAATTGGTAGAGTATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAAG
CCCTCTTGACCTGCCA
Downstream region at tRNA end position 
tacatagtta
Secondary structure (Cloverleaf model)
>SRA1002235	Trp	CCA
                   t      GCCA tacatagtta
                     A - T
                     G - C
                     G - C
                     T - A
                     C - G
                     A - T
                     A - T          G A
                    T     C T C C C     A
      T A A        A      | + | | |     G
    T       C T C G       G G G G G     C
    G       | | | +                 T T
    G       G A G T
      T A          A     GGGTT
                    T - A
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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