The detailed information of tRNA gene sequence


Sequence ID>SRA1002262
Genome IDSRR001308.331903
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 217
End posion on genome 128
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
ggaaggctta
tRNA gene sequence 
GGAGAGGTGGATGAGCGGTTTAAGTCGCACGCCTGGAAAGCGTGTGTGGGCTAATCCCCA
CCGCGGGTTCGAATCCCGCCCTCTCCGCCA
Downstream region at tRNA end position 
ataagcaagc
Secondary structure (Cloverleaf model)
>SRA1002262	Ser	GGA
                   a      GCCA ataagcaagc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G T A G       G C G G G     C
    G         + | |                 T T
    T       A G T C
      T T A        G     TGTGGGCTAATCCCCACC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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