The detailed information of tRNA gene sequence


Sequence ID>SRA1002282
Genome IDSRR001308.345751
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 8
End posion on genome 98
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
nnnctatccc
tRNA gene sequence 
GGAAGTGTGGCCGAGCGGTTTATGGCAGCAGTCTTGAAAACTGCCGAGGGTTAATAGCCC
TCCGTGAGTTCGAATCTCACCGCTTCCGCCA
Downstream region at tRNA end position 
aaactgaaag
Secondary structure (Cloverleaf model)
>SRA1002282	Ser	TGA
                   c      GCCA aaactgaaag
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T + G
                     G - C          T A
                    T     C A C T C     A
      C G A        G      | | | | |     G
    G       G C C G       G T G A G     C
    G       + | | |                 T T
    T       T G G C
      T T A        A     CGAGGGTTAATAGCCCTCC
                    G - C
                    C - G
                    A - T
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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