The detailed information of tRNA gene sequence


Sequence ID>SRA1002289
Genome IDSRR001308.349527
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 22
End posion on genome 112
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gcctccactt
tRNA gene sequence 
GGAGAGGTGGATGAGCGGTTTAAGTCGCACGCCTGGAAAGCGTGTTCAGGATAATATCCT
GACGCGGGTTCGAATCCCGCCCTCTCCGCCA
Downstream region at tRNA end position 
agaattcccc
Secondary structure (Cloverleaf model)
>SRA1002289	Ser	GGA
                   t      GCCA agaattcccc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G T A G       G C G G G     C
    G         + | |                 T T
    T       A G T C
      T T A        G     TTCAGGATAATATCCTGAC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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