The detailed information of tRNA gene sequence


Sequence ID>SRA1002290
Genome IDSRR001308.351136
Search identical group
Phylum/ClassMetagenomic characterization of a wastewater treatment plant (SRP000180)
Species
Start position on genome 198
End posion on genome 273
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
aactggtgtc
tRNA gene sequence 
GGGGTCGTAGCTCAGTTGGTAGAGCGTCTCGTTCGCAATGAGAAGGTCAGGGGTTCGAAT
CCCCTCGGCTCCACCA
Downstream region at tRNA end position 
gccttcgnnn
Secondary structure (Cloverleaf model)
>SRA1002290	Ala	CGC
                   c      ACCA gccttcgnnn
                     G - C
                     G - C
                     G + T
                     G - C
                     T + G
                     C - G
                     G - C          T A
                    T     T C C C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    T - A
                    C - G
                    T - A
                    C - G
                    G + T
                  T       A
                  T       A
                    C G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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