The detailed information of tRNA gene sequence


Sequence ID>SRA1002417
Genome IDSRR001323.88395
Search identical group
Phylum/ClassMetagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Species
Start position on genome 106
End posion on genome 30
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
nnnnnnnnnt
tRNA gene sequence 
AGGAGTGTAGCTCAGTTTGGGAGAGCAGCGGTCTCCAAAACCGCAGGGCGGGGGTTCGAG
TCCCTCCACTCCTGCCA
Downstream region at tRNA end position 
tttttagctt
Secondary structure (Cloverleaf model)
>SRA1002417	Trp	CCA
                   t      GCCA tttttagctt
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     G - C          T G
                    T     C T C C C     A
      T G A        A      | + | | |     G
    T       C T C G       G G G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        A     AGGGC
                    G - C
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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