The detailed information of tRNA gene sequence


Sequence ID>SRA1002571
Genome IDSRR001663.42876
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 89
End posion on genome 15
Amino Acid Arg
Anticodon ACG
Upstream region at tRNA start position 
nnncttccaa
tRNA gene sequence 
GCGCTTGTAGCTCAGCGGATTAGAGCATCTGACTACGGATCAGAGGGTCGGGAGTTCGAA
TCTCTCCAGGCGCGCtt
Downstream region at tRNA end position 
ctgaaaactg
Secondary structure (Cloverleaf model)
>SRA1002571	Arg	ACG
                   a      GCtt ctgaaaactg
                     G - C
                     C - G
                     G - C
                     C - G
                     T + G
                     T - A
                     G - C          T A
                    T     C T C T C     A
      C G A        A      | + | | |     G
    G       C T C G       G G G A G     C
    G       | | | |                 T T
    A       G A G C
      T T A        A     GGGTC
                    T - A
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G
                    A C G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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