The detailed information of tRNA gene sequence


Sequence ID>SRA1002576
Genome IDSRR001663.48794
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 25
End posion on genome 114
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
acccgtcagc
tRNA gene sequence 
GGAGACGTGGCCGAGTGGTCGAAGGCGCTCCCCTGCTAAGGGAGTAGGCCCGGAAGGGTC
TCGAGGGTTCGAATCCCTTCGTCTCCGCCA
Downstream region at tRNA end position 
tcannnnnnn
Secondary structure (Cloverleaf model)
>SRA1002576	Ser	GCT
                   c      GCCA tcannnnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     T T C C C     A
      T G A        G      + | | | |     G
    G       G C C G       G A G G G     C
    G         | | |                 T T
    T       A G G C
      C G A        G     TAGGCCCGGAAGGGTCTC
                    C - G
                    T - A
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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