The detailed information of tRNA gene sequence


Sequence ID>SRA1002581
Genome IDSRR001663.63595
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 98
End posion on genome 14
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
tttaatttgt
tRNA gene sequence 
GGGGCGATGGCGGAATTGGTAGACGCGTCGGTCTTAGGAACCGATAGAGCAATCTGTGAA
GGTTCGAGTCCTTTTCGCCCTACCA
Downstream region at tRNA end position 
taactatatt
Secondary structure (Cloverleaf model)
>SRA1002581	Leu	TAG
                   t      ACCA taactatatt
                     G + T
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     A - T          T G
                    T     T T T C C     A
      T A A        G      + | | | |     G
    T       G G C G       G A A G G     C
    G         | | |                 T T
    G       A C G C
      T A G        G     TAGAGCAATCTGT
                    T - A
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       G
                    T A G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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