The detailed information of tRNA gene sequence


Sequence ID>SRA1002587
Genome IDSRR001663.79561
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 86
End posion on genome 13
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
tttggatatt
tRNA gene sequence 
GCGGGTGTAGTTCAATGGTAGAACGCTAGCCTTCCAAGCTGGATGTAAGGGTTCGATTCC
CTTTACCCGCTCCA
Downstream region at tRNA end position 
aaaattaaaa
Secondary structure (Cloverleaf model)
>SRA1002587	Gly	TCC
                   t      TCCA aaaattaaaa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     T - A
                     G + T          T T
                    T     T T C C C     A
        A A        A      | | | | |     G
      T     C T T G       A A G G G     C
      G     | | | |                 T T
      G     G A A C
        T A        G     ATGT
                    C - G
                    T + G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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