The detailed information of tRNA gene sequence


Sequence ID>SRA1002590
Genome IDSRR001663.86425
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 103
End posion on genome 32
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position
tttgcgttcg
tRNA gene sequence
GGGCGATTAGCACAGTGGTAGCGCACTTCCTTCACACGGAAGGGGTCACTGGTTCGAATC
CAGTATCGCCCAtta
Downstream region at tRNA end position
aatcttttaa
Secondary structure (Cloverleaf model)
>SRA1002590	Val	CAC
                   g      Atta aatcttttaa
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     A - T
                     T - A          T A
                    T     T G A C C     A
        G A        A      | | | | |     G
      T     C A C G       A C T G G     C
      G     |   | |                 T T
      G     G C G C
        T A        A     GGGTC
                    C - G
                    T - A
                    T - A
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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