The detailed information of tRNA gene sequence


Sequence ID>SRA1002591
Genome IDSRR001663.88099
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 108
End posion on genome 35
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tagaggttac
tRNA gene sequence 
GGCTCGGTAGCTCAGCTGGTTAGAGCGTGGGATTCATAACCCCAAGGTCGGGAGTTCAAG
TCTCCCCCGAGCCAttt
Downstream region at tRNA end position 
tttattaatt
Secondary structure (Cloverleaf model)
>SRA1002591	Met	CAT
                   c      Attt tttattaatt
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T G
                    T     C C C T C     A
      C G A        A      | | | | |     A
    T       C T C G       G G G A G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    T - A
                    G - C
                    G - C
                    G - C
                    A   C
                  T       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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