The detailed information of tRNA gene sequence


Sequence ID>SRA1002594
Genome IDSRR001663.97092
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 85
End posion on genome 11
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttgaggttat
tRNA gene sequence 
GGCTCGGTAGCTCAGCTGGTTAGAGCGTGGGATTCATAACCCCAAGGTCGGGAGTTCAAG
TCTCCCCCGAGCCACtt
Downstream region at tRNA end position 
ttttgaagnn
Secondary structure (Cloverleaf model)
>SRA1002594	Met	CAT
                   t      ACtt ttttgaagnn
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T G
                    T     C C C T C     A
      C G A        A      | | | | |     A
    T       C T C G       G G G A G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    T - A
                    G - C
                    G - C
                    G - C
                    A   C
                  T       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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