The detailed information of tRNA gene sequence


Sequence ID>SRA1002615
Genome IDSRR001663.159618
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 17
End posion on genome 106
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gattcgctga
tRNA gene sequence 
GGAGACGTCGCATAGTCCGGCCGAGTGCACCACCCTGCTAAGGTGGAGTCCCCGCAAGGG
GACCGAGGGTTCAAATCCCTCCGTCTCCGCgt
Downstream region at tRNA end position 
ttaggtaacg
Secondary structure (Cloverleaf model)
>SRA1002615	Ser	GCT
                   a      GCgt ttaggtaacg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     C T C C C     A
    C T G A        C      | | | | |     A
  C         T A C G       G A G G G     C
  G         + | | |                 T T
  G         G T G C
    C C G A        A     AGTCCCCGCAAGGGGACC
                    C - G
                    C - G
                    A - T
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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