The detailed information of tRNA gene sequence


Sequence ID>SRA1002616
Genome IDSRR001663.160223
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 93
End posion on genome 17
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aaattttggg
tRNA gene sequence 
GGGCCTGTAGTTCAATTGGTTAGAACCCACGGCTCATAACCGTGTTGTTGCAGGTTCGAG
TCCTGCCGGGCCCACCA
Downstream region at tRNA end position 
tcctccttct
Secondary structure (Cloverleaf model)
>SRA1002616	Met	CAT
                   g      ACCA tcctccttct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     G - C          T G
                    T     C G T C C     A
      T A A        A      | | | | |     G
    T       C T T G       G C A G G     C
    G       | | | |                 T T
    G       G A A C
      T T A        C     TTGTT
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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