The detailed information of tRNA gene sequence


Sequence ID>SRA1002621
Genome IDSRR001663.174328
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 113
End posion on genome 37
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
nnnncaaagt
tRNA gene sequence 
GGGCCTGTAGTTCAATTGGTTAGAACCCACGGCTCATAACCGTGTTGTTGCAGGTTCGAG
TCCTGCCGGGCCCACCA
Downstream region at tRNA end position 
acccttgcgt
Secondary structure (Cloverleaf model)
>SRA1002621	Met	CAT
                   t      ACCA acccttgcgt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T + G
                     G - C          T G
                    T     C G T C C     A
      T A A        A      | | | | |     G
    T       C T T G       G C A G G     C
    G       | | | |                 T T
    G       G A A C
      T T A        C     TTGTT
                    C - G
                    A - T
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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