The detailed information of tRNA gene sequence


Sequence ID>SRA1002622
Genome IDSRR001663.175329
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 89
End posion on genome 14
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position
nnnnnnnnnT
tRNA gene sequence
GGGCATGTAGCTCAGTTGGATAGAGCATCAGATTCCGGTTCTGAGGGTCGGGGGTTCGAG
TCCCTCCATGCTCGTgt
Downstream region at tRNA end position
tttgtacttt
Secondary structure (Cloverleaf model)
>SRA1002622	Arg	CCG
                   T      GTgt tttgtacttt
                     G - C
                     G + T
                     G - C
                     C - G
                     A - T
                     T - A
                     G - C          T G
                    T     C T C C C     A
      T G A        A      | + | | |     G
    T       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      A T A        A     GGGTC
                    T - A
                    C - G
                    A - T
                    G - C
                    A - T
                  T       T
                  T       G
                    C C G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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