The detailed information of tRNA gene sequence


Sequence ID>SRA1002623
Genome IDSRR001663.176935
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 112
End posion on genome 36
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
nttgagttaT
tRNA gene sequence 
GGCTCGGTAGCTCAGCTGGTTAGAGCGTGGGATTCATAACCCCAAGGTCGGGAGTTCAAG
TCTCCCCCGAGCCAACt
Downstream region at tRNA end position 
tttttgaagt
Secondary structure (Cloverleaf model)
>SRA1002623	Met	CAT
                   T      AACt tttttgaagt
                     G - C
                     G - C
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T G
                    T     C C C T C     A
      C G A        A      | | | | |     A
    T       C T C G       G G G A G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTC
                    T - A
                    G - C
                    G - C
                    G - C
                    A   C
                  T       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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