The detailed information of tRNA gene sequence


Sequence ID>SRA1002655
Genome IDSRR001663.290436
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 35
End posion on genome 108
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
tggaagagcc
tRNA gene sequence 
ACGGGTGTAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGAA
TCCTGTCACCCCGAnnn
Downstream region at tRNA end position 
nnnnnnnnnn
Secondary structure (Cloverleaf model)
>SRA1002655	Pro	TGG
                   c      Annn nnnnnnnnnn
                     A   G
                     C   C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T A
                    T     T G T C C     A
      T G A        A      + | | | |     G
    T       C G C G       G C A G G     C
    T       | | | |                 T T
    G       G C G C
      G T A        G     ATGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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