The detailed information of tRNA gene sequence


Sequence ID>SRA1002663
Genome IDSRR001663.317028
Search identical group
Phylum/ClassSynechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Species
Start position on genome 18
End posion on genome 90
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
tttaagcgac
tRNA gene sequence 
GGGGTCTTAGCTCAGTTGGTAGAGCGCTGCGATCGCACCGCAGAGGTCAGGGGTTCGAAT
CCCCTAGTCTCCAtgc
Downstream region at tRNA end position 
ctttcaagat
Secondary structure (Cloverleaf model)
>SRA1002663	Ala	CGC
                   c      Atgc ctttcaagat
                     G - C
                     G - C
                     G + T
                     G - C
                     T   T
                     C - G
                     T - A          T A
                    T     T C C C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    C - G
                    T - A
                    G - C
                    C - G
                    G - C
                  A       C
                  T       A
                    C G C
Intron
Comment/Decision
Genome/Seq. Info.[SRA]

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